Citrobacter freundii

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, is classified as a chemoheterotroph, and functions as a facultative anaerobe. This microbe is found in a variety of environments, including human and animal intestines, soil, and water, where it thrives as part of the normal gut flora.As a gram-negative organism, C. freundii possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a characteristic that contributes to its pathogenic potential in certain situations. Its rod shape allows for efficient motility, often attributed to flagella, facilitating its survival in diverse environments. As a mesophilic organism, C. freundii prefers moderate temperatures, typically flourishing between 30°C and 37°C, which aligns well with the average temperatures found in mammalian bodies.C. freundii's classification as a chemoheterotroph indicates that it acquires energy and carbon from organic compounds, which it metabolizes through a range of biochemical pathways. This versatility allows it to thrive in varied environments, contributing to its role in nutrient cycling. Being a facultative anaerobe, C. freundii can grow in both aerobic and anaerobic conditions. This adaptability enables it to survive in oxygen-rich environments as well as in the oxygen-limited conditions found within the gastrointestinal tract. Beyond its role as a commensal organism, C. freundii can also be an opportunistic pathogen, implicated in urinary tract infections, septicemia, and gastroenteritis. It is of particular concern in clinical settings due to its resistance to multiple antibiotics, providing a significant challenge in treatment. Additionally, its ability to degrade a variety of substrates makes it an attractive candidate for biotechnological applications, particularly in waste treatment processes and bioremediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Citrobacter freundii
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii

Accession NumberLJEB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5852 genes

Non-Coding Genes

496 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
t3ss structural protein sepqNCTC6267_00929Not Available-769728 - 77061533752.7
t3ss componentNCTC6267_00930Not Available-770602 - 77102416721.3
t3ss componentNCTC6267_00931Not Available-771017 - 77139715075.4
t3ss translocator escnNCTC6267_00932Not Available-771397 - 77273748709.2
t3ss structural protein escvNCTC6267_00933Not Available-772721 - 77313715721.2
t3ss structural protein escvNCTC6267_00934Not Available-773082 - 77474961536.3
t3ss regulator mpcNCTC6267_00935Not Available-774746 - 77509913880.7
sepzNCTC6267_00936Not Available+775271 - 7755468616.43
t3ss componentNCTC6267_00937Not Available+775614 - 77597312697.3
t3ss structural protein escjNCTC6267_00938Not Available+776017 - 77631010739.9

Displaying genes 1 – 10 of 39632 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da

Displaying 1–10 of 83 metabolites