Citrobacter freundii str. GED7749C

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii str. GED7749C is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain does not undergo sporulation, indicating a reliance on vegetative growth under various environmental conditions. C. freundii is commonly found in diverse habitats, including hospital sewage, sewage systems, soil, surface waters, and the intestinal tracts of various organisms, suggesting a versatile ecological adaptability. The presence of C. freundii in hospital sewage highlights its potential role in the microbial communities associated with human waste, where it may contribute to biogeochemical cycles or influence the dynamics of other microbial populations. Its facultative anaerobic nature allows it to thrive in both oxygen-rich and oxygen-poor environments, further enhancing its survival across different habitats. Additionally, the ability of C. freundii to inhabit the intestinal tract indicates its potential involvement in symbiotic or commensal relationships within the gut microbiome, although the precise interactions and contributions to host health or disease remain to be elucidated. Overall, Citrobacter freundii str. GED7749C exemplifies a resilient bacterium capable of colonizing varied environments, underscoring its significance in both natural ecosystems and anthropogenic settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Citrobacter freundii str. GED7749C
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii str. GED7749C

Accession NumberLRPR00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4675 genes

Non-Coding Genes

322 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Major head subunitHMPREF3212_00002Not Available-1452 - 266343559.9
Trna-asn;Not AvailableNot Available+1765 - 1840Not Available
Head maturation proteaseHMPREF3212_00003Not Available-2673 - 352129387.1
Trna-thr;Not AvailableNot Available+3447 - 3522Not Available
Trna-tyr;Not AvailableNot Available+3531 - 3615Not Available
Portal proteinHMPREF3212_00004Not Available-3535 - 483948189.2
Trna-gly;Not AvailableNot Available+3730 - 3804Not Available
Trna-thr;Not AvailableNot Available+3810 - 3885Not Available
Trna-phe;Not AvailableNot Available+4200 - 4275Not Available
Terminase large subunitHMPREF3212_00005Not Available-4839 - 657565157.0

Displaying genes 1 – 10 of 4997 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

342 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 342 metabolites