Citrobacter freundii

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii is a Gram-negative, rod-shaped bacterium characterized by the presence of true flagella and a facultative anaerobic metabolism. This microbe is nonsporulating, which indicates its inability to form spores as a survival mechanism under adverse conditions. C. freundii is typically found in diverse habitats, including hospital sewage, the intestinal tract of various hosts, general sewage, soil, and surface waters. The genomic architecture of C. freundii is notable, comprising ten replicons, which reflects its complex genetic organization and potential adaptability to various environments. The strain is represented by multiple genome accessions, underscoring the existence of various genomic sequences associated with this species. C. freundii's environmental versatility allows it to thrive in different niches, providing insight into its potential role in nutrient cycling and microbial community dynamics. Its presence in both clinical and environmental settings highlights its ecological significance and the need for further research to understand its interactions within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

33582 bp

Thymine Count

32066 bp

Guanine Count

33629 bp

Cytosine Count

35109 bp

Genome Length

134386 bp

Protein-coding Genes

141 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
t3ss structural protein sepqNCTC6267_00929Not AvailableNegative769728 - 77061533752.7
t3ss componentNCTC6267_00930Not AvailableNegative770602 - 77102416721.3
t3ss componentNCTC6267_00931Not AvailableNegative771017 - 77139715075.4
t3ss translocator escnNCTC6267_00932Not AvailableNegative771397 - 77273748709.2
t3ss structural protein escvNCTC6267_00933Not AvailableNegative772721 - 77313715721.2
t3ss structural protein escvNCTC6267_00934Not AvailableNegative773082 - 77474961536.3
t3ss regulator mpcNCTC6267_00935Not AvailableNegative774746 - 77509913880.7
sepzNCTC6267_00936Not AvailablePositive775271 - 7755468616.43
t3ss componentNCTC6267_00937Not AvailablePositive775614 - 77597312697.3
t3ss structural protein escjNCTC6267_00938Not AvailablePositive776017 - 77631010739.9

Displaying genes 1 – 10 of 39632 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total