Citrobacter freundii

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii is a Gram-negative, rod-shaped bacterium characterized by the presence of true flagella and a facultative anaerobic metabolism. This microbe is nonsporulating, which indicates its inability to form spores as a survival mechanism under adverse conditions. C. freundii is typically found in diverse habitats, including hospital sewage, the intestinal tract of various hosts, general sewage, soil, and surface waters. The genomic architecture of C. freundii is notable, comprising ten replicons, which reflects its complex genetic organization and potential adaptability to various environments. The strain is represented by multiple genome accessions, underscoring the existence of various genomic sequences associated with this species. C. freundii's environmental versatility allows it to thrive in different niches, providing insight into its potential role in nutrient cycling and microbial community dynamics. Its presence in both clinical and environmental settings highlights its ecological significance and the need for further research to understand its interactions within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

1265935 bp

Thymine Count

1264576 bp

Guanine Count

1350546 bp

Cytosine Count

1346301 bp

Genome Length

5227358 bp

Protein-coding Genes

5997 genes

Non-Coding Genes

355 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Duf2724 domain-containing proteinNCTC6267_04098Not AvailableNegative3307369 - 33075697547.46
Regulatory cii family proteinNCTC6267_04099Not AvailableNegative3307577 - 330808618368.1
RegulatorNCTC6267_04100Not AvailableNegative3308119 - 33083408186.03
Repressor protein ciNCTC6267_04101Not AvailablePositive3308436 - 330903221776.1
Gp19NCTC6267_04102Not AvailablePositive3309053 - 331075064280.1
Tyrosine-type recombinase/integraseNCTC6267_04103Not AvailablePositive3310833 - 331163930819.3
AttrNot AvailableNot AvailablePositive3311961 - 3311981Not Available
AttlNot AvailableNot AvailablePositive5169538 - 5169550Not Available
Dna invertase, resolvase, site-specific recombinase pinNCTC6267_06364Not AvailablePositive5169667 - 516996611145.5
uncharacterised proteinNCTC6267_06365Not AvailablePositive5170426 - 51706327548.35

Displaying genes 271 – 280 of 39632 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total