Citrobacter freundii

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii is a Gram-negative, rod-shaped bacterium characterized by the presence of true flagella and a facultative anaerobic metabolism. This microbe is nonsporulating, which indicates its inability to form spores as a survival mechanism under adverse conditions. C. freundii is typically found in diverse habitats, including hospital sewage, the intestinal tract of various hosts, general sewage, soil, and surface waters. The genomic architecture of C. freundii is notable, comprising ten replicons, which reflects its complex genetic organization and potential adaptability to various environments. The strain is represented by multiple genome accessions, underscoring the existence of various genomic sequences associated with this species. C. freundii's environmental versatility allows it to thrive in different niches, providing insight into its potential role in nutrient cycling and microbial community dynamics. Its presence in both clinical and environmental settings highlights its ecological significance and the need for further research to understand its interactions within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

1265935 bp

Thymine Count

1264576 bp

Guanine Count

1350546 bp

Cytosine Count

1346301 bp

Genome Length

5227358 bp

Protein-coding Genes

5997 genes

Non-Coding Genes

355 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prolipoprotein diacylglyceryl transferaseNCTC6267_01165Not AvailablePositive965790 - 96666533136.9
thymidylate synthaseNCTC6267_01166Not AvailablePositive966672 - 96746630412.2
prepilin peptidase-dependent protein aNCTC6267_01167Not AvailablePositive967651 - 96808816711.1
prepilin peptidase-dependent protein bNCTC6267_01168Not AvailablePositive968079 - 96864220785.0
protein of uncharacterised function (duf2509)NCTC6267_01169Not AvailablePositive968639 - 96904615300.8
prepilin peptidase-dependent protein cNCTC6267_01170Not AvailablePositive969031 - 96935412417.3
exonuclease v subunit gammaNCTC6267_01171Not AvailablePositive969367 - 972375115294.0
exodeoxyribonuclease v gamma subunitNCTC6267_01172Not AvailablePositive972362 - 97273914531.3
protease iii precursor (pitrilysin)NCTC6267_01173Not AvailablePositive972922 - 97436153430.9
protease iii precursor (pitrilysin)NCTC6267_01174Not AvailablePositive974300 - 97471915990.1

Displaying genes 1461 – 1470 of 39632 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total