Agrobacterium fabrum strain 12D13

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 12D13 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and mobility, attributed to the presence of flagella. This strain thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating its preference for moderate environmental conditions. The genomic structure of A. fabrum strain 12D13 is notable for containing five replicons, which may suggest a complex regulatory system for gene expression and replication. Furthermore, this bacterium has two membranes, typical of Gram-negative organisms, contributing to its structural integrity and functionality. A. fabrum strain 12D13 is classified as free-living, indicating that it does not rely on a host organism for survival and can inhabit a variety of environments. The capacity to thrive in multiple habitats underscores its ecological versatility and potential roles in various ecosystems. The presence of this strain in diverse habitats may contribute to biogeochemical cycles and interactions within microbial communities, offering insights into microbial ecology and the dynamics of plant-associated bacteria. Its adaptability and metabolic capabilities could play a role in soil health and nutrient cycling, making it an interesting subject for further research in environmental microbiology. Accessions for this strain include NZ_CP033034.1, NZ_CP033035.1, NZ_CP033037.1, NZ_CP033038.1, and NZ_CP033036.1, providing a basis for genetic and functional studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 12D13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 12D13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 12D13 plasmid pAt12D13b, complete

Gene Summary

Adenine Count

25510 bp

Thymine Count

24972 bp

Guanine Count

34733 bp

Cytosine Count

34375 bp

Genome Length

119590 bp

Protein-coding Genes

121 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s rrna (guanine(527)-n(7))-methyltransferase rsmgAt12D13_RS12765Not AvailableNegative2528956 - 252957322966.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgAt12D13_RS12770Not AvailableNegative2529585 - 253146868800.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeAt12D13_RS12775Not AvailableNegative2531531 - 253285947975.0
transcription termination factor rhoAt12D13_RS12780Not AvailableNegative2532949 - 253421446992.0
protoporphyrinogen oxidase hemjAt12D13_RS12785Not AvailableNegative2534400 - 253494520432.4
uroporphyrinogen decarboxylaseAt12D13_RS12790Not AvailableNegative2534942 - 253597637180.9
pyruvate, water dikinase regulatory proteinAt12D13_RS12795Not AvailablePositive2536385 - 253720630318.5
two-component system response regulator actrAt12D13_RS12800Not AvailablePositive2537238 - 253783721463.1
shikimate dehydrogenaseAt12D13_RS12805Not AvailablePositive2537830 - 253869031279.4
dephospho-coa kinaseAt12D13_RS12810Not AvailablePositive2538690 - 253927121246.8

Displaying genes 4721 – 4730 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.