Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium fabrum |
| Strain | 12D13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium fabrum str. 12D13
Gene Summary
Adenine Count
25510 bp
Thymine Count
24972 bp
Guanine Count
34733 bp
Cytosine Count
34375 bp
Genome Length
119590 bp
Protein-coding Genes
121 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| plasmid partitioning protein repa | At12D13_RS25530 | Not Available | + | 1 - 1218 | 44814.4 |
| plasmid partitioning protein repb | At12D13_RS25535 | Not Available | + | 1215 - 2201 | 36439.8 |
| plasmid replication protein repc | At12D13_RS25540 | Not Available | + | 2381 - 3667 | 47583.5 |
| dna-directed rna polymerase subunit omega | At12D13_RS25550 | Not Available | - | 4739 - 5467 | 27387.7 |
| response regulator | At12D13_RS25555 | Not Available | + | 5450 - 5749 | 11012.4 |
| hypothetical protein | At12D13_RS27025 | Not Available | - | 6199 - 6369 | 6143.1 |
| carbohydrate abc transporter permease | At12D13_RS25565 | Not Available | - | 7108 - 7989 | 32790.7 |
| carbohydrate abc transporter permease | At12D13_RS25570 | Not Available | - | 7986 - 9074 | 40256.5 |
| extracellular solute-binding protein | At12D13_RS25575 | Not Available | - | 9088 - 10356 | 46065.2 |
| duf4142 domain-containing protein | At12D13_RS25580 | Not Available | - | 10887 - 11414 | 18676.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

