Agrobacterium fabrum str. 12D13

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 12D13 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This organism is classified as an aerobe, indicating its dependence on oxygen for growth and metabolism. A notable characteristic of A. fabrum str. 12D13 is its ability to inhabit multiple environments, suggesting a versatile ecological adaptability. The Gram-negative cell wall structure of this bacterium contributes to its unique physiological properties, which may influence its interactions within various habitats. The rod shape is typical of many bacteria in the Agrobacterium genus, allowing for motility and colonization in diverse ecological niches. The preference for a moderate temperature of 25.0°C positions A. fabrum str. 12D13 well within the range of many temperate ecosystems, where it could play a role in nutrient cycling or as a participant in microbial communities. The ability of A. fabrum str. 12D13 to thrive in various habitats could suggest its involvement in biogeochemical processes, potentially influencing plant-microbe interactions in natural and agricultural ecosystems. This adaptability may also provide insights into the organism’s potential utility in biotechnological applications, particularly in plant biotechnology, where its relatives are known for their roles in gene transfer. Understanding the ecological roles and interactions of A. fabrum str. 12D13 in its native habitats could lead to further discoveries regarding its contributions to microbial diversity and ecosystem function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain12D13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 12D13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum str. 12D13


Gene Summary

Adenine Count

25510 bp

Thymine Count

24972 bp

Guanine Count

34733 bp

Cytosine Count

34375 bp

Genome Length

119590 bp

Protein-coding Genes

121 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
plasmid partitioning protein repaAt12D13_RS25530Not Available+1 - 121844814.4
plasmid partitioning protein repbAt12D13_RS25535Not Available+1215 - 220136439.8
plasmid replication protein repcAt12D13_RS25540Not Available+2381 - 366747583.5
dna-directed rna polymerase subunit omegaAt12D13_RS25550Not Available-4739 - 546727387.7
response regulatorAt12D13_RS25555Not Available+5450 - 574911012.4
hypothetical proteinAt12D13_RS27025Not Available-6199 - 63696143.1
carbohydrate abc transporter permeaseAt12D13_RS25565Not Available-7108 - 798932790.7
carbohydrate abc transporter permeaseAt12D13_RS25570Not Available-7986 - 907440256.5
extracellular solute-binding proteinAt12D13_RS25575Not Available-9088 - 1035646065.2
duf4142 domain-containing proteinAt12D13_RS25580Not Available-10887 - 1141418676.9

Displaying genes 1 – 10 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites