Agrobacterium fabrum str. J-07

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain J-07 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements and optimal growth temperature of 25.0°C. This microbe is part of a diverse group of bacteria, exhibiting versatility in its habitat, as it has been identified in multiple environmental contexts. The Gram-negative classification indicates that A. fabrum str. J-07 possesses a thin peptidoglycan layer surrounded by an outer membrane, which contributes to its structural integrity and potential responses to environmental stresses. Its rod shape may facilitate motility and colonization in various habitats, allowing it to thrive in diverse ecological niches. As an aerobe, A. fabrum str. J-07 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability varies. This dependency highlights the microbe's role in aerobic processes within its ecological contexts, potentially participating in nutrient cycling and interactions with other microorganisms. The adaptability of A. fabrum str. J-07 to multiple habitats suggests that it may be involved in complex ecological interactions, possibly influencing plant health or soil dynamics through its metabolic activities. Understanding the specific ecological roles and interactions of this strain could provide insights into its contributions to microbial community structure and function in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainJ-07

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. J-07
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum str. J-07


Gene Summary

Adenine Count

1148956 bp

Thymine Count

1155651 bp

Guanine Count

1672331 bp

Cytosine Count

1656030 bp

Genome Length

5632968 bp

Protein-coding Genes

5519 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hybrid sensor histidine kinase - response regulatorAGR8A_Cc50008Not Available-1597020 - 159769124807.7
conserved exported hypothetical proteinAGR8A_Cc50009Not Available-1597785 - 15980398599.47
conserved hypothetical proteinAGR8A_Cc50010Not Available-1598179 - 159867618120.8
Tail proteinAGR8A_Cc50011Not Available-1598409 - 1602209135581.0
Phage cell wall peptidaseAGR8A_Cc50012Not Available-1602227 - 160266115980.2
Minor tail proteinAGR8A_Cc50013Not Available-1602658 - 160354230869.0
Tail proteinAGR8A_Cc50014Not Available-1603539 - 160417723085.6
Putative tail tape measure proteinAGR8A_Cc50015Not Available-1604238 - 160481918986.8
conserved hypothetical proteinAGR8A_Cc50016Not Available+1604924 - 16051609035.94
conserved hypothetical proteinAGR8A_Cc50017Not Available+1605153 - 160555714506.3

Displaying genes 1 – 10 of 1270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites