Agrobacterium fabrum strain 12D13

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 12D13 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and mobility, attributed to the presence of flagella. This strain thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating its preference for moderate environmental conditions. The genomic structure of A. fabrum strain 12D13 is notable for containing five replicons, which may suggest a complex regulatory system for gene expression and replication. Furthermore, this bacterium has two membranes, typical of Gram-negative organisms, contributing to its structural integrity and functionality. A. fabrum strain 12D13 is classified as free-living, indicating that it does not rely on a host organism for survival and can inhabit a variety of environments. The capacity to thrive in multiple habitats underscores its ecological versatility and potential roles in various ecosystems. The presence of this strain in diverse habitats may contribute to biogeochemical cycles and interactions within microbial communities, offering insights into microbial ecology and the dynamics of plant-associated bacteria. Its adaptability and metabolic capabilities could play a role in soil health and nutrient cycling, making it an interesting subject for further research in environmental microbiology. Accessions for this strain include NZ_CP033034.1, NZ_CP033035.1, NZ_CP033037.1, NZ_CP033038.1, and NZ_CP033036.1, providing a basis for genetic and functional studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 12D13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 12D13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 12D13 plasmid pAt12D13b, complete

Gene Summary

Adenine Count

25510 bp

Thymine Count

24972 bp

Guanine Count

34733 bp

Cytosine Count

34375 bp

Genome Length

119590 bp

Protein-coding Genes

121 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gdp-l-fucose synthase family proteinAt12D13_RS23250Not AvailablePositive1936245 - 193724036639.3
glycoside hydrolase family 28 proteinAt12D13_RS23255Not AvailablePositive1937405 - 193971182734.7
hypothetical proteinAt12D13_RS23260Not AvailableNegative1940245 - 194054110784.0
polysaccharide biosynthesis/export family proteinAt12D13_RS23265Not AvailableNegative1940764 - 194202346597.6
gumc family proteinAt12D13_RS23270Not AvailableNegative1942027 - 194418978738.5
helix-turn-helix transcriptional regulatorAt12D13_RS23275Not AvailableNegative1944245 - 194495525300.6
pig-l deacetylase family proteinAt12D13_RS23280Not AvailableNegative1945042 - 194569524553.2
glucose-1-phosphate cytidylyltransferaseAt12D13_RS23285Not AvailableNegative1945692 - 194650431395.8
class i sam-dependent methyltransferaseAt12D13_RS23290Not AvailableNegative1946501 - 194779348358.4
dtdp-4-dehydrorhamnose 3,5-epimeraseAt12D13_RS23295Not AvailablePositive1948098 - 194862519430.0

Displaying genes 2221 – 2230 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.