Agrobacterium fabrum strain 12D13

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 12D13 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and mobility, attributed to the presence of flagella. This strain thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating its preference for moderate environmental conditions. The genomic structure of A. fabrum strain 12D13 is notable for containing five replicons, which may suggest a complex regulatory system for gene expression and replication. Furthermore, this bacterium has two membranes, typical of Gram-negative organisms, contributing to its structural integrity and functionality. A. fabrum strain 12D13 is classified as free-living, indicating that it does not rely on a host organism for survival and can inhabit a variety of environments. The capacity to thrive in multiple habitats underscores its ecological versatility and potential roles in various ecosystems. The presence of this strain in diverse habitats may contribute to biogeochemical cycles and interactions within microbial communities, offering insights into microbial ecology and the dynamics of plant-associated bacteria. Its adaptability and metabolic capabilities could play a role in soil health and nutrient cycling, making it an interesting subject for further research in environmental microbiology. Accessions for this strain include NZ_CP033034.1, NZ_CP033035.1, NZ_CP033037.1, NZ_CP033038.1, and NZ_CP033036.1, providing a basis for genetic and functional studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 12D13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 12D13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 12D13 plasmid pAt12D13b, complete

Gene Summary

Adenine Count

25510 bp

Thymine Count

24972 bp

Guanine Count

34733 bp

Cytosine Count

34375 bp

Genome Length

119590 bp

Protein-coding Genes

121 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protocatechuate 3,4-dioxygenase subunit betaAt12D13_RS21940Not AvailableNegative1637635 - 163837527691.3
4-carboxymuconolactone decarboxylaseAt12D13_RS21945Not AvailableNegative1638372 - 163880615688.5
3-oxoadipate enol-lactonaseAt12D13_RS21950Not AvailableNegative1638810 - 163960728721.3
pca operon transcription factor pcaqAt12D13_RS21955Not AvailablePositive1639703 - 164064733750.3
4-hydroxybenzoate 3-monooxygenaseAt12D13_RS21960Not AvailableNegative1640641 - 164181343679.9
helix-turn-helix domain-containing proteinAt12D13_RS21965Not AvailablePositive1641931 - 164285434267.5
iclr family transcriptional regulatorAt12D13_RS21970Not AvailableNegative1642824 - 164358527481.8
3-oxoacid coa-transferase subunit aAt12D13_RS21975Not AvailablePositive1643724 - 164443124770.9
coa transferase subunit bAt12D13_RS21980Not AvailablePositive1644428 - 164512324823.7
3-oxoadipyl-coa thiolaseAt12D13_RS21985Not AvailablePositive1645134 - 164633941642.1

Displaying genes 1961 – 1970 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.