Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium fabrum |
| Strain | strain 12D13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium fabrum strain 12D13 plasmid pAt12D13b, complete
Gene Summary
Adenine Count
25510 bp
Thymine Count
24972 bp
Guanine Count
34733 bp
Cytosine Count
34375 bp
Genome Length
119590 bp
Protein-coding Genes
121 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system contractile sheath small subunit | At12D13_RS20950 | Not Available | Negative | 1436237 - 1436746 | 19098.9 |
| type vi secretion system protein tssa | At12D13_RS20955 | Not Available | Negative | 1436812 - 1437867 | 38492.9 |
| type vi secretion system atpase tssh | At12D13_RS20960 | Not Available | Positive | 1438088 - 1440766 | 96699.9 |
| hcp family type vi secretion system effector | At12D13_RS20965 | Not Available | Positive | 1440824 - 1441300 | 17317.3 |
| rap1a/tai family immunity protein | At12D13_RS20970 | Not Available | Positive | 1441407 - 1441796 | 13771.4 |
| type vi secretion system amidase effector protein tae4 | At12D13_RS20975 | Not Available | Positive | 1441808 - 1442308 | 18272.4 |
| type vi secretion system tip protein tssi/vgrg | At12D13_RS20980 | Not Available | Positive | 1442323 - 1444587 | 81877.6 |
| duf2169 domain-containing protein | At12D13_RS20985 | Not Available | Positive | 1444601 - 1445710 | 41731.0 |
| polymorphic toxin type 15 domain-containing protein | At12D13_RS20990 | Not Available | Positive | 1445707 - 1447287 | 56639.8 |
| gad-like domain-containing protein | At12D13_RS20995 | Not Available | Positive | 1447290 - 1448021 | 27831.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

