Agrobacterium fabrum strain 12D13

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 12D13 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an aerobic organism. This strain has been isolated from multiple habitats, indicating its potential adaptability to various environmental conditions. The aerobic nature of A. fabrum strain 12D13 suggests that it relies on oxygen for its metabolic processes, which may influence its distribution and ecological interactions in its native environments. The ability of A. fabrum to persist in diverse habitats may be linked to its metabolic versatility, allowing it to exploit different substrates available in these environments. This adaptability could play a crucial role in its interactions with plant systems, as members of the Agrobacterium genus are known for their involvement in plant-microbe interactions, particularly in the context of genetic transfer. Overall, Agrobacterium fabrum strain 12D13 exemplifies the ecological versatility characteristic of its genus, suggesting avenues for further exploration in microbial ecology and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 12D13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 12D13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 12D13


Gene Summary

Adenine Count

25510 bp

Thymine Count

24972 bp

Guanine Count

34733 bp

Cytosine Count

34375 bp

Genome Length

119590 bp

Protein-coding Genes

121 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
plasmid partitioning protein repaAt12D13_RS25530Not Available+1 - 121844814.4
plasmid partitioning protein repbAt12D13_RS25535Not Available+1215 - 220136439.8
plasmid replication protein repcAt12D13_RS25540Not Available+2381 - 366747583.5
dna-directed rna polymerase subunit omegaAt12D13_RS25550Not Available-4739 - 546727387.7
response regulatorAt12D13_RS25555Not Available+5450 - 574911012.4
hypothetical proteinAt12D13_RS27025Not Available-6199 - 63696143.1
carbohydrate abc transporter permeaseAt12D13_RS25565Not Available-7108 - 798932790.7
carbohydrate abc transporter permeaseAt12D13_RS25570Not Available-7986 - 907440256.5
extracellular solute-binding proteinAt12D13_RS25575Not Available-9088 - 1035646065.2
duf4142 domain-containing proteinAt12D13_RS25580Not Available-10887 - 1141418676.9

Displaying genes 1 – 10 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites