Agrobacterium fabrum strain 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 1D132 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This strain is an aerobic organism, thriving in environments where oxygen is available. It is classified as mesophilic, with an optimal growth temperature of 25°C, and it can tolerate a range of temperatures within the mesophilic range. The genomic structure of Agrobacterium fabrum strain 1D132 is notable for containing five replicons, which may play a role in its genetic diversity and adaptability. Additionally, the bacterium possesses two membranes, a common feature of Gram-negative bacteria that contributes to its structural integrity and interaction with the surrounding environment. Agrobacterium fabrum strain 1D132 is known to have a free-living biotic relationship, allowing it to exist independently in various habitats. This lifestyle may enable it to colonize diverse ecological niches and interact with other organisms in its environment. The strain is represented by several accessions, specifically NZ_CP033022.1, NZ_CP033023.1, NZ_CP033026.1, NZ_CP033024.1, and NZ_CP033025.1, which provide insights into its genomic characteristics and variations. In summary, Agrobacterium fabrum strain 1D132 showcases traits that contribute to its adaptability and ecological success, particularly its free-living nature and ability to thrive in multiple habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rida family proteinAt1D132_RS19320Not AvailablePositive1007114 - 100750914289.0
d-ta family plp-dependent enzymeAt1D132_RS19325Not AvailablePositive1007542 - 100863038330.0
m81 family metallopeptidaseAt1D132_RS19330Not AvailablePositive1008703 - 101018153586.3
hutd family proteinAt1D132_RS19335Not AvailableNegative1010194 - 101076620732.9
alpha/beta fold hydrolaseAt1D132_RS19340Not AvailableNegative1010805 - 101181535941.5
urocanate hydrataseAt1D132_RS19345Not AvailableNegative1012011 - 101368461035.6
n-formylglutamate deformylaseAt1D132_RS19350Not AvailableNegative1013699 - 101449929632.1
histidine ammonia-lyaseAt1D132_RS19355Not AvailableNegative1014573 - 101611753271.8
imidazolonepropionaseAt1D132_RS19360Not AvailableNegative1016114 - 101737344402.0
formimidoylglutamate deiminaseAt1D132_RS19365Not AvailablePositive1017487 - 101883348090.5

Displaying genes 881 – 890 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.