Agrobacterium fabrum strain 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 1D132 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This strain is an aerobic organism, thriving in environments where oxygen is available. It is classified as mesophilic, with an optimal growth temperature of 25°C, and it can tolerate a range of temperatures within the mesophilic range. The genomic structure of Agrobacterium fabrum strain 1D132 is notable for containing five replicons, which may play a role in its genetic diversity and adaptability. Additionally, the bacterium possesses two membranes, a common feature of Gram-negative bacteria that contributes to its structural integrity and interaction with the surrounding environment. Agrobacterium fabrum strain 1D132 is known to have a free-living biotic relationship, allowing it to exist independently in various habitats. This lifestyle may enable it to colonize diverse ecological niches and interact with other organisms in its environment. The strain is represented by several accessions, specifically NZ_CP033022.1, NZ_CP033023.1, NZ_CP033026.1, NZ_CP033024.1, and NZ_CP033025.1, which provide insights into its genomic characteristics and variations. In summary, Agrobacterium fabrum strain 1D132 showcases traits that contribute to its adaptability and ecological success, particularly its free-living nature and ability to thrive in multiple habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrolipoyl dehydrogenaseAt1D132_RS12125Not AvailableNegative2363928 - 236533448649.0
lyse family translocatorAt1D132_RS12130Not AvailableNegative2365398 - 236604523331.2
mapeg family proteinAt1D132_RS12135Not AvailableNegative2366057 - 236647014965.9
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseAt1D132_RS12140Not AvailableNegative2366541 - 236777342762.6
2-oxoglutarate dehydrogenase e1 componentAt1D132_RS12145Not AvailableNegative2367827 - 2370823112246.0
succinate--coa ligase subunit alphaAt1D132_RS12150Not AvailableNegative2370998 - 237190031127.8
adp-forming succinate--coa ligase subunit betaAt1D132_RS12155Not AvailableNegative2371918 - 237311141887.6
malate dehydrogenaseAt1D132_RS12160Not AvailableNegative2373145 - 237410733553.0
cell division protein zapeAt1D132_RS12165Not AvailableNegative2374286 - 237544943223.4
protease inhibitor inh/omp19 family proteinAt1D132_RS12170Not AvailableNegative2375542 - 237608418355.5

Displaying genes 4281 – 4290 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.