Agrobacterium fabrum strain 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 1D132 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This strain is an aerobic organism, thriving in environments where oxygen is available. It is classified as mesophilic, with an optimal growth temperature of 25°C, and it can tolerate a range of temperatures within the mesophilic range. The genomic structure of Agrobacterium fabrum strain 1D132 is notable for containing five replicons, which may play a role in its genetic diversity and adaptability. Additionally, the bacterium possesses two membranes, a common feature of Gram-negative bacteria that contributes to its structural integrity and interaction with the surrounding environment. Agrobacterium fabrum strain 1D132 is known to have a free-living biotic relationship, allowing it to exist independently in various habitats. This lifestyle may enable it to colonize diverse ecological niches and interact with other organisms in its environment. The strain is represented by several accessions, specifically NZ_CP033022.1, NZ_CP033023.1, NZ_CP033026.1, NZ_CP033024.1, and NZ_CP033025.1, which provide insights into its genomic characteristics and variations. In summary, Agrobacterium fabrum strain 1D132 showcases traits that contribute to its adaptability and ecological success, particularly its free-living nature and ability to thrive in multiple habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmdAt1D132_RS10530Not AvailablePositive2040762 - 204152928470.4
response regulatorAt1D132_RS10535Not AvailableNegative2041557 - 2045252136512.0
dead/deah box helicaseAt1D132_RS10540Not AvailablePositive2045719 - 204719153249.0
dmt family transporterAt1D132_RS10545Not AvailableNegative2047282 - 204819032000.3
doxx family proteinAt1D132_RS10550Not AvailableNegative2048353 - 204874213776.3
l,d-transpeptidaseAt1D132_RS10555Not AvailableNegative2048984 - 204960122595.5
dmt family transporterAt1D132_RS10560Not AvailableNegative2049680 - 205057631432.7
circularly permuted type 2 atp-grasp proteinAt1D132_RS10565Not AvailablePositive2051021 - 205243052688.2
alpha-e domain-containing proteinAt1D132_RS10570Not AvailablePositive2052434 - 205337535808.5
transglutaminase domain-containing proteinAt1D132_RS10575Not AvailablePositive2053397 - 205421829928.6

Displaying genes 3981 – 3990 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.