Agrobacterium fabrum strain 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain 1D132 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This strain is an aerobic organism, thriving in environments where oxygen is available. It is classified as mesophilic, with an optimal growth temperature of 25°C, and it can tolerate a range of temperatures within the mesophilic range. The genomic structure of Agrobacterium fabrum strain 1D132 is notable for containing five replicons, which may play a role in its genetic diversity and adaptability. Additionally, the bacterium possesses two membranes, a common feature of Gram-negative bacteria that contributes to its structural integrity and interaction with the surrounding environment. Agrobacterium fabrum strain 1D132 is known to have a free-living biotic relationship, allowing it to exist independently in various habitats. This lifestyle may enable it to colonize diverse ecological niches and interact with other organisms in its environment. The strain is represented by several accessions, specifically NZ_CP033022.1, NZ_CP033023.1, NZ_CP033026.1, NZ_CP033024.1, and NZ_CP033025.1, which provide insights into its genomic characteristics and variations. In summary, Agrobacterium fabrum strain 1D132 showcases traits that contribute to its adaptability and ecological success, particularly its free-living nature and ability to thrive in multiple habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strainstrain 1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum strain 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
secondary thiamine-phosphate synthase enzyme yjbqAt1D132_RS09695Not AvailableNegative1867469 - 186789115665.9
hwe histidine kinase domain-containing proteinAt1D132_RS09700Not AvailablePositive1868135 - 187068793856.4
duf930 domain-containing proteinAt1D132_RS09705Not AvailableNegative1870839 - 187175932806.6
rna polymerase sigma factor rpodAt1D132_RS09710Not AvailableNegative1871954 - 187400877403.9
dna primaseAt1D132_RS09715Not AvailableNegative1874401 - 187638673687.4
gatb/yqey domain-containing proteinAt1D132_RS09720Not AvailableNegative1876774 - 187722616709.2
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitAt1D132_RS09725Not AvailablePositive1877562 - 187876742942.1
mate family efflux transporterAt1D132_RS09730Not AvailableNegative1878804 - 188020149728.6
methyl-accepting chemotaxis proteinAt1D132_RS09735Not AvailablePositive1880532 - 188262274103.6
duf2938 domain-containing proteinAt1D132_RS09740Not AvailablePositive1882916 - 188339517510.7

Displaying genes 3821 – 3830 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.