Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium fabrum |
| Strain | strain 1D132 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium fabrum strain 1D132 chromosome linear, complete
Gene Summary
Adenine Count
409533 bp
Thymine Count
410307 bp
Guanine Count
595904 bp
Cytosine Count
598154 bp
Genome Length
2013898 bp
Protein-coding Genes
1760 genes
Non-Coding Genes
21 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssg | At1D132_RS21340 | Not Available | Negative | 1438760 - 1439764 | 36125.1 |
| type vi secretion system baseplate subunit tssf | At1D132_RS21345 | Not Available | Negative | 1439774 - 1441555 | 65510.1 |
| type vi secretion system baseplate subunit tsse | At1D132_RS21350 | Not Available | Negative | 1441548 - 1442057 | 19002.8 |
| type vi secretion system accessory protein tagj | At1D132_RS21355 | Not Available | Negative | 1442050 - 1442874 | 29841.1 |
| type vi secretion system contractile sheath large subunit | At1D132_RS21360 | Not Available | Negative | 1442871 - 1444265 | 50952.2 |
| type vi secretion system contractile sheath large subunit | At1D132_RS21365 | Not Available | Negative | 1444320 - 1445801 | 55035.1 |
| type vi secretion system contractile sheath small subunit | At1D132_RS21370 | Not Available | Negative | 1445895 - 1446404 | 19098.9 |
| type vi secretion system protein tssa | At1D132_RS21375 | Not Available | Negative | 1446470 - 1447525 | 38501.9 |
| type vi secretion system atpase tssh | At1D132_RS21380 | Not Available | Positive | 1447746 - 1450424 | 96647.8 |
| hcp family type vi secretion system effector | At1D132_RS21385 | Not Available | Positive | 1450482 - 1450958 | 17317.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

