Agrobacterium fabrum str. 12D13

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 12D13 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and mobility, facilitated by the presence of flagella. This organism thrives in various habitats and exhibits mesophilic traits, with an optimal growth temperature of 25°C. Its adaptability to multiple environments indicates a versatile ecological role. The bacterium possesses a unique genetic structure with five replicons, which may contribute to its ability to adapt and survive in diverse conditions. Additionally, Agrobacterium fabrum str. 12D13 has two membranes, a feature typical of Gram-negative bacteria that can influence its interaction with the environment and other organisms. As a free-living bacterium, Agrobacterium fabrum str. 12D13 plays a significant role in soil ecosystems, where it may participate in nutrient cycling and plant interaction. Its ability to thrive in various habitats suggests it could have implications in agricultural practices, particularly in relation to plant health and soil microbiome dynamics. The presence of multiple accessions (NZ_CP033036.1; NZ_CP033034.1; NZ_CP033035.1; NZ_CP033037.1; NZ_CP033038.1) indicates a genetic diversity that could further enhance its ecological versatility. Understanding its biological traits and ecological interactions can provide insights into its potential applications in biotechnology and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain12D13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 12D13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 12D13 plasmid pAt12D13b, complete

Gene Summary

Adenine Count

25510 bp

Thymine Count

24972 bp

Guanine Count

34733 bp

Cytosine Count

34375 bp

Genome Length

119590 bp

Protein-coding Genes

121 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pentapeptide mxkdx repeat proteinAt12D13_RS09940Not AvailablePositive1937579 - 19378369453.89
atp-dependent clp protease proteolytic subunitAt12D13_RS09945Not AvailableNegative1937943 - 193852421392.6
hupe/urej family proteinAt12D13_RS09950Not AvailablePositive1938759 - 193934919624.4
duf2076 domain-containing proteinAt12D13_RS09955Not AvailablePositive1939450 - 194019625068.5
preq(1) synthaseAt12D13_RS09960Not AvailableNegative1940222 - 194068617057.4
cation diffusion facilitator family transporterAt12D13_RS09965Not AvailableNegative1940734 - 194163631805.0
glyoxalase superfamily proteinAt12D13_RS09970Not AvailableNegative1941792 - 194219315320.2
branched-chain amino acid abc transporter substrate-binding proteinAt12D13_RS09975Not AvailableNegative1942261 - 194336737661.8
duf3095 domain-containing proteinAt12D13_RS09980Not AvailablePositive1943653 - 194482842061.2
arsr/smtb family transcription factorAt12D13_RS09985Not AvailableNegative1944948 - 194526811494.8

Displaying genes 4181 – 4190 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.