Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium fabrum |
| Strain | 12D13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium fabrum strain 12D13 chromosome linear, complete
Gene Summary
Adenine Count
404104 bp
Thymine Count
405883 bp
Guanine Count
593432 bp
Cytosine Count
594963 bp
Genome Length
1998382 bp
Protein-coding Genes
1754 genes
Non-Coding Genes
21 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid partitioning protein repa | At12D13_RS25530 | Not Available | Positive | 1 - 1218 | 44814.4 |
| plasmid partitioning protein repb | At12D13_RS25535 | Not Available | Positive | 1215 - 2201 | 36439.8 |
| plasmid replication protein repc | At12D13_RS25540 | Not Available | Positive | 2381 - 3667 | 47583.5 |
| dna-directed rna polymerase subunit omega | At12D13_RS25550 | Not Available | Negative | 4739 - 5467 | 27387.7 |
| response regulator | At12D13_RS25555 | Not Available | Positive | 5450 - 5749 | 11012.4 |
| hypothetical protein | At12D13_RS27025 | Not Available | Negative | 6199 - 6369 | 6143.1 |
| carbohydrate abc transporter permease | At12D13_RS25565 | Not Available | Negative | 7108 - 7989 | 32790.7 |
| carbohydrate abc transporter permease | At12D13_RS25570 | Not Available | Negative | 7986 - 9074 | 40256.5 |
| extracellular solute-binding protein | At12D13_RS25575 | Not Available | Negative | 9088 - 10356 | 46065.2 |
| duf4142 domain-containing protein | At12D13_RS25580 | Not Available | Negative | 10887 - 11414 | 18676.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

