Agrobacterium fabrum str. 12D13

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 12D13 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and mobility, facilitated by the presence of flagella. This organism thrives in various habitats and exhibits mesophilic traits, with an optimal growth temperature of 25°C. Its adaptability to multiple environments indicates a versatile ecological role. The bacterium possesses a unique genetic structure with five replicons, which may contribute to its ability to adapt and survive in diverse conditions. Additionally, Agrobacterium fabrum str. 12D13 has two membranes, a feature typical of Gram-negative bacteria that can influence its interaction with the environment and other organisms. As a free-living bacterium, Agrobacterium fabrum str. 12D13 plays a significant role in soil ecosystems, where it may participate in nutrient cycling and plant interaction. Its ability to thrive in various habitats suggests it could have implications in agricultural practices, particularly in relation to plant health and soil microbiome dynamics. The presence of multiple accessions (NZ_CP033036.1; NZ_CP033034.1; NZ_CP033035.1; NZ_CP033037.1; NZ_CP033038.1) indicates a genetic diversity that could further enhance its ecological versatility. Understanding its biological traits and ecological interactions can provide insights into its potential applications in biotechnology and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain12D13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 12D13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 12D13 plasmid pAt12D13b, complete

Gene Summary

Adenine Count

25510 bp

Thymine Count

24972 bp

Guanine Count

34733 bp

Cytosine Count

34375 bp

Genome Length

119590 bp

Protein-coding Genes

121 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dinb family proteinAt12D13_RS17835Not AvailableNegative765553 - 76613121580.5
duf2945 domain-containing proteinAt12D13_RS17840Not AvailableNegative766167 - 7663858031.42
holliday junction branch migration dna helicase ruvbAt12D13_RS17845Not AvailableNegative766438 - 76747838137.2
holliday junction branch migration protein ruvaAt12D13_RS17850Not AvailableNegative767565 - 76818221306.8
crossover junction endodeoxyribonuclease ruvcAt12D13_RS17855Not AvailableNegative768210 - 76872218167.2
methyl-accepting chemotaxis proteinAt12D13_RS17860Not AvailablePositive768969 - 77127882560.0
llm class flavin-dependent oxidoreductaseAt12D13_RS17865Not AvailablePositive771423 - 77242436611.9
yebc/pmpr family dna-binding transcriptional regulatorAt12D13_RS17870Not AvailableNegative772511 - 77325726869.5
pyridoxamine 5'-phosphate oxidase family proteinAt12D13_RS17875Not AvailablePositive773455 - 77395818702.0
mbl fold metallo-hydrolaseAt12D13_RS17880Not AvailableNegative773995 - 77483730758.4

Displaying genes 1161 – 1170 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.