Agrobacterium fabrum str. C58

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. C58 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25°C and requires aerobic conditions for growth. This microbe is known to inhabit a diverse range of environments, suggesting its adaptability to various ecological niches. As a member of the Agrobacterium genus, A. fabrum str. C58 is particularly notable for its role in plant-microbe interactions, where it is widely studied for its ability to transfer genetic material to plants. This trait has significant implications for biotechnology, particularly in the fields of plant genetic engineering and agricultural biotechnology. The organism's aerobic nature indicates its reliance on oxygen for metabolic processes, which may influence its distribution in environments where oxygen availability varies. The capacity to thrive in multiple habitats highlights the potential versatility of A. fabrum str. C58, enabling it to survive in both natural and anthropogenically altered ecosystems. Overall, the ecological adaptability and specific growth requirements of Agrobacterium fabrum str. C58 provide a foundation for understanding its interactions within various ecosystems, as well as its applications in sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainC58

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. C58
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Tracheophyta
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum str. C58 chromosome linear, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1830 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
holliday junction branch migration dna helicase ruvbATU_RS17285Not AvailableNegative802331 - 80337138121.2
holliday junction branch migration protein ruvaATU_RS17290Not AvailableNegative803458 - 80407521320.8
crossover junction endodeoxyribonuclease ruvcATU_RS17295Not AvailableNegative804103 - 80461518167.2
methyl-accepting chemotaxis proteinATU_RS17300Not AvailablePositive804862 - 80717182402.9
llm class flavin-dependent oxidoreductaseATU_RS17305Not AvailablePositive807318 - 80831936611.9
yebc/pmpr family dna-binding transcriptional regulatorATU_RS17310Not AvailableNegative808406 - 80915226855.5
pyridoxamine 5'-phosphate oxidase family proteinATU_RS17315Not AvailablePositive809350 - 80985318677.9
mbl fold metallo-hydrolaseATU_RS17320Not AvailableNegative809890 - 81073230744.4
tigr00282 family metallophosphoesteraseATU_RS17325Not AvailableNegative810848 - 81167229575.2
5-formyltetrahydrofolate cyclo-ligaseATU_RS17330Not AvailableNegative811772 - 81235921042.3

Displaying genes 701 – 710 of 4619 in total

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm0017261Phenylpyruvic acidC9H8O3Chemical structure of Phenylpyruvic acid156-06-9
Average164.158Da
Monoisotopic164.047344122Da
BASm0019271ferroheme bC34H30FeN4O4Chemical structure of ferroheme bNULL
Average614.485Da
Monoisotopic614.163836Da
BASm0020436AcetosyringoneC10H12O4Chemical structure of Acetosyringone2478-38-8
Average196.1999Da
Monoisotopic196.073558872Da

Displaying 1–6 of 6 metabolites

Health Effects

Health ConditionRelationReference
Crown gallCausesPMC12602688
Hairy root diseasesCausesPMC12602688
TumorsCausesPMC12602688
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688

Displaying health effects 1 – 5 of 5 in total