Alistipes ihumii AP11

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes ihumii AP11 is a Gram-negative bacterium predominantly found in the gut. This species possesses flagella, indicating that it is motile, which may contribute to its ecological niche within the gastrointestinal tract. The genome of Alistipes ihumii AP11 comprises a single replicon, suggesting a streamlined genetic organization that can be advantageous for survival and adaptation in its specific habitat. The reference accession number for Alistipes ihumii AP11 is CP102294.1, which provides a genetic basis for further studies and comparisons within the genus Alistipes. The presence of this bacterium in the gut microbiome may play a role in various biological processes, including digestion, metabolism, and the maintenance of gut health. The motility conferred by flagella may facilitate the colonization of specific niches within the gut, allowing Alistipes ihumii AP11 to compete effectively with other microbial inhabitants. Additionally, the characteristics of Gram-negative bacteria, including the structure of their cell walls, suggest potential interactions with the host immune system, influencing health outcomes. Overall, the traits of Alistipes ihumii AP11 underscore its potential significance in gut ecology and its role in the complex interplay between the microbiome and host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes ihumii
StrainAP11

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes ihumii AP11, Complete Genome

Gene Summary

Adenine Count

588608 bp

Thymine Count

582180 bp

Guanine Count

802418 bp

Cytosine Count

806809 bp

Genome Length

2780015 bp

Protein-coding Genes

2174 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate 1-decarboxylaseNQ491_08400A6L8I7Negative2074010 - 207436312917.6
pantoate--beta-alanine ligaseNQ491_08405A6L8I6Negative2074511 - 207534430814.0
dipeptidyl peptidase 3NQ491_08410Q9NY33Positive2075516 - 207750475619.2
lipoprotein signal peptidaseNQ491_08415B2RI39Negative2078074 - 207867322059.4
hu family dna-binding proteinNQ491_08420Q9KV83Negative2079024 - 20792969321.59
Trna-serNot AvailableNot AvailablePositive2079494 - 2079578Not Available
glycoside hydrolase family 99-like domain-containing proteinNQ491_08430P0C7J1Negative2079768 - 208098246016.1
glycoside hydrolase family 99-like domain-containing proteinNQ491_08435B0RVK2Negative2080998 - 208226646527.8
ragb/susd family nutrient uptake outer membrane proteinNQ491_08440A7LXT5Negative2082351 - 208411767893.8
tonb-dependent receptorNQ491_08445Q8A1G1Negative2084131 - 2087457123340.0

Displaying genes 1681 – 1690 of 2252 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.