Alistipes onderdonkii

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes onderdonkii is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites including the gut, mouth, and skin of humans and animals. As an obligate anaerobe, Alistipes onderdonkii requires the absence of oxygen to survive and grow. The Gram-negative cell wall structure of this microbe contributes to its ability to evade the host's immune system, allowing it to persist in the gut and other body sites. Its rod shape is typical of many bacterial species, providing a large surface area for nutrient absorption and interactions with the host environment. As a mesophilic microbe, Alistipes onderdonkii grows best in temperatures between 20-45°C, which is consistent with the temperatures found in the human body. As a chemoheterotroph, it relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its growth and survival. Alistipes onderdonkii can be found in the gut microbiome of healthy individuals, where it plays a role in maintaining the balance of the microbial community, and its presence has been linked to various diseases, including inflammatory bowel disease and obesity, highlighting the complex relationships between the microbiome and human health. The ability of Alistipes onderdonkii to produce short-chain fatty acids as byproducts of fermentation has been shown to have anti-inflammatory effects, which may contribute to its potential therapeutic applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes onderdonkii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes onderdonkii

Accession NumberRCXC00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3180 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+302120 - 302133Not Available
IntegraseEAI99_01195Not Available+303132 - 30427144151.0
hypothetical proteinEAI99_01200Not Available-304303 - 30457210498.7
AntirepressorEAI99_01205Not Available-304569 - 30539931520.9
hypothetical proteinEAI99_01210Not Available-305411 - 30575212389.8
hypothetical proteinEAI99_01215Not Available+305971 - 3062169372.22
hypothetical proteinEAI99_01220Not Available+306213 - 3064619565.85
dna-binding proteinEAI99_01225Not Available+306452 - 30672410461.7
Hypothetical proteinEAI99_01230Not Available+306732 - 3069719091.0
3_nc_021792: atpase containing proteinEAI99_01235Not Available+306990 - 30897575085.1

Displaying genes 1 – 10 of 3296 in total

Pathways

18 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

62 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da
BASm0017409PA(16:0/18:1(9Z))C37H71O8PChemical structure of PA(16:0/18:1(9Z))NULL
Average674.941Da
Monoisotopic674.488656244Da
BASm0017415PA(18:1(9Z)/18:1(9Z))C39H73O8PChemical structure of PA(18:1(9Z)/18:1(9Z))14268-17-8
Average700.979Da
Monoisotopic700.504306309Da

Displaying 1–10 of 62 metabolites