Alistipes ihumii AP11

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes ihumii AP11 is a Gram-negative bacterium predominantly found in the gut. This species possesses flagella, indicating that it is motile, which may contribute to its ecological niche within the gastrointestinal tract. The genome of Alistipes ihumii AP11 comprises a single replicon, suggesting a streamlined genetic organization that can be advantageous for survival and adaptation in its specific habitat. The reference accession number for Alistipes ihumii AP11 is CP102294.1, which provides a genetic basis for further studies and comparisons within the genus Alistipes. The presence of this bacterium in the gut microbiome may play a role in various biological processes, including digestion, metabolism, and the maintenance of gut health. The motility conferred by flagella may facilitate the colonization of specific niches within the gut, allowing Alistipes ihumii AP11 to compete effectively with other microbial inhabitants. Additionally, the characteristics of Gram-negative bacteria, including the structure of their cell walls, suggest potential interactions with the host immune system, influencing health outcomes. Overall, the traits of Alistipes ihumii AP11 underscore its potential significance in gut ecology and its role in the complex interplay between the microbiome and host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes ihumii
StrainAP11

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes ihumii AP11, Complete Genome

Gene Summary

Adenine Count

588608 bp

Thymine Count

582180 bp

Guanine Count

802418 bp

Cytosine Count

806809 bp

Genome Length

2780015 bp

Protein-coding Genes

2174 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna repair protein radcNQ491_07600A5FMW5Positive1875024 - 187571025138.0
crispr-associated protein csn1NQ491_07605C9X1G5Positive1876087 - 1879761141713.0
type ii crispr-associated endonuclease cas1NQ491_07610C9X1G6Positive1879764 - 188065133473.7
crispr-associated endonuclease cas2NQ491_07615A6GZS1Positive1880657 - 188099513317.3
site-specific integraseNQ491_07620Not AvailablePositive1882613 - 188395052436.7
putative dna binding domain-containing proteinNQ491_07625O50224Positive1884051 - 188551155303.3
duf6043 family proteinNQ491_07630Not AvailablePositive1885599 - 188651635239.8
tyrosine-type recombinase/integraseNQ491_07635Not AvailablePositive1886672 - 188700112517.1
duf5906 domain-containing proteinNQ491_07640Not AvailablePositive1886991 - 188821447998.6
toprim domain-containing proteinNQ491_07645P52308Positive1888398 - 188923731296.2

Displaying genes 1521 – 1530 of 2252 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.