Alistipes finegoldii strain aa_0143

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes finegoldii strain aa_0143 is a Gram-negative, anaerobic bacterium characterized by the presence of flagella. This motility structure allows the organism to navigate its environment effectively, which is particularly important for its survival and interaction with host organisms. Strain aa_0143 has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation within its ecological niche. Its primary host is Oncorhynchus mykiss, commonly known as the rainbow trout. This association suggests a potential role for A. finegoldii in the microbiome of aquatic vertebrates, which may influence the health and physiology of its fish host. The accession number for Alistipes finegoldii strain aa_0143 is RCXA00000000.1, providing a unique identifier for researchers to access genomic data and further study its characteristics. Understanding the specific interactions between A. finegoldii and Oncorhynchus mykiss can shed light on the broader ecological roles of gut microbiota in fish, particularly regarding digestion, nutrient absorption, and overall health. In summary, Alistipes finegoldii strain aa_0143 exemplifies the complex relationships within aquatic ecosystems, highlighting the importance of microbial inhabitants in maintaining the health and functionality of their hosts.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes finegoldii
Strainstrain aa_0143

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes finegoldii strain aa_0143 Scaffold_0167, whole genome

Gene Summary

Adenine Count

743927 bp

Thymine Count

750301 bp

Guanine Count

1007870 bp

Cytosine Count

1000275 bp

Genome Length

3502373 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseEAI98_11405Not AvailablePositive2663490 - 266470143653.4
duf4296 domain-containing proteinEAI98_11410Not AvailablePositive2664698 - 266552531866.1
cytosine deaminaseEAI98_11415Not AvailablePositive2665485 - 266663342269.8
rna polymerase sigma-70 factorEAI98_11425Not AvailablePositive2668687 - 266934325001.8
duf4974 domain-containing proteinEAI98_11430Not AvailablePositive2669414 - 267041236900.7
susc/raga family tonb-linked outer membrane proteinEAI98_11435Not AvailablePositive2670538 - 2674095131908.0
ragb/susd family nutrient uptake outer membrane proteinEAI98_11440Not AvailablePositive2674115 - 267590267872.5
hypothetical proteinEAI98_11445Not AvailablePositive2675931 - 267724146310.9
ig-like domain-containing proteinEAI98_11450Not AvailablePositive2677259 - 267860547793.1
site-specific tyrosine recombinase xerdEAI98_11455Not AvailableNegative2678776 - 267967234623.6

Displaying genes 2231 – 2240 of 3036 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.