Alistipes finegoldii strain aa_0143

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes finegoldii strain aa_0143 is a Gram-negative, anaerobic bacterium characterized by the presence of flagella. This motility structure allows the organism to navigate its environment effectively, which is particularly important for its survival and interaction with host organisms. Strain aa_0143 has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation within its ecological niche. Its primary host is Oncorhynchus mykiss, commonly known as the rainbow trout. This association suggests a potential role for A. finegoldii in the microbiome of aquatic vertebrates, which may influence the health and physiology of its fish host. The accession number for Alistipes finegoldii strain aa_0143 is RCXA00000000.1, providing a unique identifier for researchers to access genomic data and further study its characteristics. Understanding the specific interactions between A. finegoldii and Oncorhynchus mykiss can shed light on the broader ecological roles of gut microbiota in fish, particularly regarding digestion, nutrient absorption, and overall health. In summary, Alistipes finegoldii strain aa_0143 exemplifies the complex relationships within aquatic ecosystems, highlighting the importance of microbial inhabitants in maintaining the health and functionality of their hosts.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes finegoldii
Strainstrain aa_0143

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes finegoldii strain aa_0143 Scaffold_0167, whole genome

Gene Summary

Adenine Count

743927 bp

Thymine Count

750301 bp

Guanine Count

1007870 bp

Cytosine Count

1000275 bp

Genome Length

3502373 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinEAI98_11040Not AvailablePositive2569579 - 25697797949.89
radical sam mobile pair protein bEAI98_11045Not AvailableNegative2569782 - 257065734030.1
mbl fold metallo-hydrolaseEAI98_11050Not AvailableNegative2570890 - 257166628955.2
helix-turn-helix domain-containing proteinEAI98_11055Not AvailablePositive2571797 - 257269635643.8
susd/ragb family nutrient-binding outer membrane lipoproteinEAI98_11060Not AvailablePositive2573018 - 257450256281.8
pkd domain-containing proteinEAI98_11065Not AvailablePositive2574521 - 257488613399.9
hypothetical proteinEAI98_11070Not AvailablePositive2574896 - 2577802107990.0
beta-glucosidaseEAI98_11075Not AvailablePositive2577799 - 258009984758.7
glycoside hydrolase family 5 proteinEAI98_11080Not AvailablePositive2580105 - 258110637902.5
duf4091 domain-containing proteinEAI98_11090Not AvailableNegative2583701 - 258547366169.4

Displaying genes 2161 – 2170 of 3036 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.