Alistipes finegoldii strain aa_0143

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes finegoldii strain aa_0143 is a Gram-negative, anaerobic bacterium characterized by the presence of flagella. This motility structure allows the organism to navigate its environment effectively, which is particularly important for its survival and interaction with host organisms. Strain aa_0143 has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation within its ecological niche. Its primary host is Oncorhynchus mykiss, commonly known as the rainbow trout. This association suggests a potential role for A. finegoldii in the microbiome of aquatic vertebrates, which may influence the health and physiology of its fish host. The accession number for Alistipes finegoldii strain aa_0143 is RCXA00000000.1, providing a unique identifier for researchers to access genomic data and further study its characteristics. Understanding the specific interactions between A. finegoldii and Oncorhynchus mykiss can shed light on the broader ecological roles of gut microbiota in fish, particularly regarding digestion, nutrient absorption, and overall health. In summary, Alistipes finegoldii strain aa_0143 exemplifies the complex relationships within aquatic ecosystems, highlighting the importance of microbial inhabitants in maintaining the health and functionality of their hosts.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes finegoldii
Strainstrain aa_0143

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes finegoldii strain aa_0143 Scaffold_0167, whole genome

Gene Summary

Adenine Count

743927 bp

Thymine Count

750301 bp

Guanine Count

1007870 bp

Cytosine Count

1000275 bp

Genome Length

3502373 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iEAI98_05460Not AvailablePositive1294200 - 1297076107701.0
porin family proteinEAI98_05465Not AvailableNegative1297230 - 129786223249.6
duf4136 domain-containing proteinEAI98_05470Not AvailableNegative1297887 - 129852824487.6
gtp cyclohydrolase i foleEAI98_05475Not AvailableNegative1298992 - 129960023456.5
rdgb/ham1 family non-canonical purine ntp pyrophosphataseEAI98_05480Not AvailableNegative1299682 - 130026321297.0
haloacid dehalogenase-like hydrolaseEAI98_05485Not AvailableNegative1300329 - 130116831928.2
nitroreductaseEAI98_05490Not AvailablePositive1301246 - 130177319382.2
response regulatorEAI98_05495Not AvailableNegative1301787 - 1304936120792.0
single-stranded-dna-specific exonuclease recjEAI98_05500Not AvailableNegative1305091 - 130685765840.4
lipoyl(octanoyl) transferase lipbEAI98_05505Not AvailableNegative1306866 - 130762427362.7

Displaying genes 1081 – 1090 of 3036 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.