Alistipes sp. AF17-16

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes sp. AF17-16 is a Gram-negative bacterium characterized by the presence of flagella, which contributes to its motility. This species possesses a single replicon, indicating a streamlined genetic architecture that is often associated with certain bacterial adaptations. The genome of Alistipes sp. AF17-16 is represented in the accession QUGX00000000.1. The Gram-negative nature of Alistipes sp. AF17-16 suggests that it has a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group. This structural composition may afford the bacterium certain advantages, such as resistance to some antibiotics and the ability to thrive in various environments. The presence of flagella enhances its ability to move toward favorable conditions, which can be critical for survival in diverse ecological niches. The single replicon indicates a potential for efficient replication and regulation of its genetic material, which might facilitate adaptation to environmental changes. In terms of ecological insight, Alistipes species are often associated with the human gut microbiome, where they play a role in the fermentation of dietary fibers and the production of short-chain fatty acids. This metabolic activity can influence host health and gut homeostasis. Therefore, understanding the traits of Alistipes sp. AF17-16 may provide insights into its ecological role and potential contributions to the microbiome's functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes sp. AF17-16
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes sp. AF17-16 AF17-16.Scaf31, whole genome shotgun

Gene Summary

Adenine Count

703830 bp

Thymine Count

724760 bp

Guanine Count

850545 bp

Cytosine Count

839934 bp

Genome Length

3119159 bp

Protein-coding Genes

2608 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter periplasmic adaptor subunitDWW79_00305Not AvailablePositive57425 - 5853440567.9
tolc family proteinDWW79_00310Not AvailablePositive58589 - 5993850289.5
hypothetical proteinDWW79_00315Not AvailablePositive60096 - 6055116853.3
prolyl-trna synthetase associated domain-containing proteinDWW79_00320Not AvailableNegative60575 - 6106619435.0
hypothetical proteinDWW79_00325Not AvailablePositive61143 - 6258254414.4
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive65224 - 65322Not Available
dna-directed rna polymerase subunit beta'DWW79_00330Not AvailableNegative62653 - 66906157813.0
dna-directed rna polymerase subunit betaDWW79_00335Not AvailableNegative67012 - 70830143106.0
50s ribosomal protein l7/l12DWW79_00340Not AvailableNegative71100 - 7147712881.4
50s ribosomal protein l10DWW79_00345Not AvailableNegative71602 - 7212318844.1

Displaying genes 61 – 70 of 2656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.