Alistipes sp. AF17-16

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes sp. AF17-16 is a Gram-negative bacterium characterized by the presence of flagella, which contributes to its motility. This species possesses a single replicon, indicating a streamlined genetic architecture that is often associated with certain bacterial adaptations. The genome of Alistipes sp. AF17-16 is represented in the accession QUGX00000000.1. The Gram-negative nature of Alistipes sp. AF17-16 suggests that it has a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group. This structural composition may afford the bacterium certain advantages, such as resistance to some antibiotics and the ability to thrive in various environments. The presence of flagella enhances its ability to move toward favorable conditions, which can be critical for survival in diverse ecological niches. The single replicon indicates a potential for efficient replication and regulation of its genetic material, which might facilitate adaptation to environmental changes. In terms of ecological insight, Alistipes species are often associated with the human gut microbiome, where they play a role in the fermentation of dietary fibers and the production of short-chain fatty acids. This metabolic activity can influence host health and gut homeostasis. Therefore, understanding the traits of Alistipes sp. AF17-16 may provide insights into its ecological role and potential contributions to the microbiome's functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes sp. AF17-16
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes sp. AF17-16 AF17-16.Scaf31, whole genome shotgun

Gene Summary

Adenine Count

703830 bp

Thymine Count

724760 bp

Guanine Count

850545 bp

Cytosine Count

839934 bp

Genome Length

3119159 bp

Protein-coding Genes

2608 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gatb/yqey domain-containing proteinDWW79_06600Not AvailableNegative1511400 - 151184615710.3
dna topoisomerase (atp-hydrolyzing) subunit bDWW79_06605Not AvailableNegative1511903 - 151386772763.2
atp-binding cassette domain-containing proteinDWW79_06610Not AvailableNegative1514010 - 151475027567.6
Tmrna,resume consensus sequence (at 88): tacaaatggcgataatagNot AvailableNot AvailablePositive1514989 - 1515386Not Available
duf4419 domain-containing proteinDWW79_06620Not AvailableNegative1515479 - 151688254018.8
ytxh domain-containing proteinDWW79_06625Not AvailablePositive1517036 - 151741914872.8
response regulatorDWW79_06630Not AvailableNegative1517616 - 151951471945.2
endonuclease muts2DWW79_06635Not AvailableNegative1519712 - 152220493288.9
mce family proteinDWW79_06640Not AvailableNegative1522242 - 152319235069.8
n-acetylmuramoyl-l-alanine amidaseDWW79_06645Not AvailableNegative1523236 - 152441742915.7

Displaying genes 1291 – 1300 of 2656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.