Alistipes sp. AF17-16

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes sp. AF17-16 is a Gram-negative bacterium characterized by the presence of flagella, which contributes to its motility. This species possesses a single replicon, indicating a streamlined genetic architecture that is often associated with certain bacterial adaptations. The genome of Alistipes sp. AF17-16 is represented in the accession QUGX00000000.1. The Gram-negative nature of Alistipes sp. AF17-16 suggests that it has a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group. This structural composition may afford the bacterium certain advantages, such as resistance to some antibiotics and the ability to thrive in various environments. The presence of flagella enhances its ability to move toward favorable conditions, which can be critical for survival in diverse ecological niches. The single replicon indicates a potential for efficient replication and regulation of its genetic material, which might facilitate adaptation to environmental changes. In terms of ecological insight, Alistipes species are often associated with the human gut microbiome, where they play a role in the fermentation of dietary fibers and the production of short-chain fatty acids. This metabolic activity can influence host health and gut homeostasis. Therefore, understanding the traits of Alistipes sp. AF17-16 may provide insights into its ecological role and potential contributions to the microbiome's functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes sp. AF17-16
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes sp. AF17-16 AF17-16.Scaf31, whole genome shotgun

Gene Summary

Adenine Count

703830 bp

Thymine Count

724760 bp

Guanine Count

850545 bp

Cytosine Count

839934 bp

Genome Length

3119159 bp

Protein-coding Genes

2608 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit deltaDWW79_06100Not AvailableNegative1395993 - 139706640206.0
duf4301 family proteinDWW79_06105Not AvailableNegative1397132 - 139859854073.7
udp-n-acetylmuramate dehydrogenaseDWW79_06110Not AvailablePositive1398764 - 139976536201.3
trna lysidine(34) synthetase tilsDWW79_06115Not AvailablePositive1399768 - 140111751255.3
duf4924 family proteinDWW79_06120Not AvailablePositive1401361 - 140192121578.1
hypothetical proteinDWW79_06125Not AvailablePositive1401939 - 140256223835.3
glycoside hydrolase family 2 proteinDWW79_06130Not AvailableNegative1402579 - 140458275377.1
cvpa family proteinDWW79_06135Not AvailablePositive1404750 - 140524717899.4
ribosome small subunit-dependent gtpase aDWW79_06140Not AvailablePositive1405253 - 140619134525.3
trmh family rna methyltransferaseDWW79_06145Not AvailablePositive1406169 - 140684925583.7

Displaying genes 1191 – 1200 of 2656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.