Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | DN590_03520 | Not Available | Negative | 728706 - 729497 | 29711.5 |
| aph(6) family putative aminoglycoside o-phosphotransferase | DN590_03525 | Not Available | Positive | 729687 - 730529 | 30863.1 |
| hoxn/hupn/nixa family nickel/cobalt transporter | DN590_03530 | Not Available | Positive | 730650 - 731678 | 37517.2 |
| l-cystine transporter | DN590_03535 | Not Available | Negative | 731731 - 733071 | 46954.1 |
| two-component system response regulator rsta | DN590_03540 | Not Available | Negative | 733318 - 734061 | 27615.5 |
| glpm family protein | DN590_03545 | Not Available | Positive | 734179 - 734514 | 12397.9 |
| dihydromonapterin reductase | DN590_03550 | Not Available | Negative | 734511 - 735233 | 26210.6 |
| arginine:ornithine antiporter | DN590_03555 | Not Available | Negative | 735270 - 736652 | 49464.5 |
| duf1471 domain-containing protein | DN590_03560 | Not Available | Negative | 736898 - 737842 | 33681.7 |
| re/si-specific nad(p)(+) transhydrogenase subunit alpha | DN590_03565 | Not Available | Positive | 738368 - 739897 | 54453.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

