Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transfer flavoprotein subunit alpha/fixb family protein | DN590_02235 | Not Available | Negative | 468717 - 469658 | 33201.6 |
| electron transfer flavoprotein | DN590_02240 | Not Available | Negative | 469674 - 470444 | 27281.6 |
| hypothetical protein | DN590_02245 | Not Available | Negative | 470553 - 470753 | 7769.74 |
| l-carnitine/gamma-butyrobetaine antiporter | DN590_02250 | Not Available | Positive | 470925 - 472442 | 56570.5 |
| crotonobetainyl-coa dehydrogenase | DN590_02255 | Not Available | Positive | 472477 - 473619 | 42485.7 |
| l-carnitine coa-transferase | DN590_02260 | Not Available | Positive | 473743 - 474960 | 44910.1 |
| crotonobetaine/carnitine-coa ligase | DN590_02265 | Not Available | Positive | 475022 - 476575 | 58367.9 |
| crotonobetainyl-coa hydratase | DN590_02270 | Not Available | Positive | 476630 - 477415 | 28127.6 |
| carnitine operon protein caie | DN590_02275 | Not Available | Positive | 477471 - 478067 | 21452.8 |
| caif/grla family transcriptional regulator | DN590_02280 | Not Available | Negative | 478144 - 478539 | 15366.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

