Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nickel-responsive transcriptional regulator nikr | DN590_01930 | Not Available | Negative | 408212 - 408613 | 15080.7 |
| lysr family transcriptional regulator | DN590_01940 | Not Available | Negative | 408705 - 409565 | 32367.2 |
| phenolic acid decarboxylase | DN590_01945 | Not Available | Positive | 409665 - 410171 | 19236.6 |
| 4'-phosphopantetheinyl transferase acpt | DN590_01950 | Not Available | Negative | 410163 - 410753 | 21239.2 |
| beta-ketoacyl-acp synthase | DN590_01955 | Not Available | Negative | 410755 - 411984 | 44141.5 |
| 3-oxoacyl-acp reductase fabg | DN590_01960 | Not Available | Negative | 411981 - 412712 | 25714.1 |
| 3-hydroxy-fatty acyl-acp dehydratase | DN590_01965 | Not Available | Negative | 412709 - 413185 | 16987.2 |
| beta-ketoacyl-acp synthase | DN590_01970 | Not Available | Negative | 413182 - 414351 | 41143.2 |
| duf3261 domain-containing protein | DN590_01975 | Not Available | Negative | 414353 - 414937 | 21517.2 |
| hypothetical protein | DN590_01980 | Not Available | Negative | 414930 - 417251 | 84067.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

