Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | DN590_01880 | Not Available | Negative | 394836 - 396035 | 43149.4 |
| rrf2 family transcriptional regulator | DN590_01885 | Not Available | Positive | 396268 - 396771 | 18857.8 |
| dipeptide/tripeptide permease dtpb | DN590_01890 | Not Available | Negative | 396859 - 398331 | 53638.4 |
| universal stress protein uspa | DN590_01895 | Not Available | Negative | 398613 - 399050 | 16124.4 |
| universal stress protein uspb | DN590_01900 | Not Available | Positive | 399443 - 399778 | 12932.1 |
| inorganic phosphate transporter | DN590_01905 | Not Available | Negative | 399843 - 401342 | 53421.6 |
| nad(p)/fad-dependent oxidoreductase | DN590_01910 | Not Available | Positive | 401572 - 402765 | 43421.2 |
| hlyd family efflux transporter periplasmic adaptor subunit | DN590_01915 | Not Available | Positive | 403173 - 404240 | 39071.0 |
| abc transporter atp-binding protein/permease | DN590_01920 | Not Available | Positive | 404237 - 406984 | 100932.0 |
| abc transporter permease | DN590_01925 | Not Available | Positive | 406984 - 408108 | 41131.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

