Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose operon transcription regulator xylr | DN590_01570 | Not Available | Negative | 328141 - 329319 | 44726.3 |
| xylose isomerase | DN590_01575 | Not Available | Positive | 329681 - 331003 | 49590.5 |
| xylulokinase | DN590_01580 | Not Available | Positive | 331075 - 332529 | 52627.2 |
| hypothetical protein | DN590_01585 | Not Available | Positive | 332697 - 333062 | 13399.7 |
| acyltransferase | DN590_01590 | Not Available | Negative | 333059 - 334054 | 37363.8 |
| hypothetical protein | DN590_01595 | Not Available | Positive | 334227 - 334535 | 11350.7 |
| glycine--trna ligase subunit alpha | DN590_01600 | Not Available | Positive | 334631 - 335542 | 34748.3 |
| glycine--trna ligase subunit beta | DN590_01605 | Not Available | Positive | 335552 - 337621 | 76548.9 |
| hypothetical protein | DN590_01610 | Not Available | Negative | 337688 - 338227 | 19517.3 |
| cold-shock protein | DN590_01615 | Not Available | Negative | 338414 - 338626 | 7403.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

