Citrobacter freundii strain GEO_16_Eff_A

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain GEO_16_Eff_A is a Gram-negative, facultative anaerobic rod bacterium. It possesses flagella, which contribute to its motility. This strain has been identified in diverse habitats, including hospital sewage, intestinal tracts, sewage, soil, and surface waters. Its ability to thrive in such varied environments indicates its ecological resilience. The strain is associated with a wide range of hosts, including Homo sapiens, various Metazoa, and several domesticated and wild animals such as Oryctolagus cuniculus (rabbits), Canis lupus familiaris (dogs), Felis catus (cats), and aquatic species like Tilapia and Cyprinus carpio. This broad host range suggests that Citrobacter freundii strain GEO_16_Eff_A may play a role in the microbiomes of these organisms, potentially influencing their health and disease states. C. freundii is known for its capacity to cause opportunistic infections, particularly in humans, where it can lead to urinary and respiratory tract infections. It is also implicated in infections in animals, including respiratory tract and wound infections in horses and dogs, as well as pleuritis and urinary tract infections in cats. The presence of this strain in hospital sewage underscores its potential as a pathogen in healthcare settings, highlighting the importance of monitoring and managing its spread. Overall, the ecological versatility and pathogenic potential of Citrobacter freundii strain GEO_16_Eff_A illustrate the complex interactions between microbial communities and their hosts across various environments, emphasizing the need for continued research on its role in health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain GEO_16_Eff_A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain GEO_16_Eff_A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain GEO_16_Eff_A

Gene Summary

Adenine Count

1321210 bp

Thymine Count

1313182 bp

Guanine Count

1404681 bp

Cytosine Count

1426347 bp

Genome Length

5465420 bp

Protein-coding Genes

5038 genes

Non-Coding Genes

330 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1010 domain-containing proteinDN590_27560Not AvailableNegative5437372 - 543766210598.1
trimethoprim-resistant dihydrofolate reductase dfra12DN590_27565Not AvailableNegative5437774 - 543827118127.9
transposaseDN590_27570Not AvailablePositive5438403 - 54385474759.55
trimethoprim-resistant dihydrofolate reductase dfra19DN590_27575Not AvailableNegative5438930 - 543949921484.8
hypothetical proteinDN590_27580Not AvailableNegative5439499 - 543999918030.7
hypothetical proteinDN590_27585Not AvailablePositive5440234 - 544168852795.0
is6 family transposaseDN590_27595Not AvailablePositive5443564 - 54436382724.26
type a-2 chloramphenicol o-acetyltransferase catiiDN590_27600Not AvailableNegative5443782 - 544442324826.6
hypothetical proteinDN590_27605Not AvailableNegative5444573 - 544507318583.0
is3 family transposaseDN590_27610Not AvailableNegative5445217 - 544640544997.3

Displaying genes 5331 – 5340 of 5368 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total