Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase t | DN590_27450 | Not Available | Negative | 5418475 - 5419731 | 45764.2 |
| is3 family transposase | DN590_27455 | Not Available | Positive | 5420243 - 5420373 | 4958.89 |
| is66-like element iskox1 family transposase | DN590_27460 | Not Available | Negative | 5420400 - 5421992 | 60136.6 |
| is66 family insertion sequence hypothetical protein | DN590_27465 | Not Available | Negative | 5422023 - 5422373 | 13266.3 |
| is66 family insertion sequence hypothetical protein | DN590_27470 | Not Available | Negative | 5422370 - 5422810 | 16312.4 |
| abc transporter | DN590_27475 | Not Available | Positive | 5423130 - 5423255 | 4599.53 |
| abc transporter | DN590_27485 | Not Available | Negative | 5426284 - 5426412 | 4637.39 |
| hypothetical protein | DN590_27490 | Not Available | Positive | 5426411 - 5426728 | 12297.7 |
| hypothetical protein | DN590_27495 | Not Available | Negative | 5426779 - 5427186 | 15035.7 |
| serine protease | DN590_27500 | Not Available | Negative | 5427644 - 5428315 | 24583.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

