Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3330 domain-containing protein | DN590_27260 | Not Available | Negative | 5393487 - 5393607 | 4216.76 |
| agmatine deiminase family protein | DN590_27265 | Not Available | Negative | 5393866 - 5394978 | 40492.9 |
| dj-1/pfpi family protein | DN590_27270 | Not Available | Positive | 5395381 - 5395944 | 20405.4 |
| sam-dependent methyltransferase | DN590_27275 | Not Available | Negative | 5396001 - 5396747 | 27487.9 |
| hypothetical protein | DN590_27280 | Not Available | Negative | 5396758 - 5397015 | 9626.72 |
| is5/is1182 family transposase | DN590_27290 | Not Available | Negative | 5397787 - 5397887 | 3914.72 |
| integrase | DN590_27310 | Not Available | Positive | 5400629 - 5401612 | 36188.7 |
| merr family transcriptional regulator | DN590_27315 | Not Available | Negative | 5401706 - 5401798 | 2909.43 |
| is6 family transposase | DN590_27320 | Not Available | Negative | 5401799 - 5401880 | 3489.39 |
| hypothetical protein | DN590_27330 | Not Available | Negative | 5402378 - 5402572 | 7457.98 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

