Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is5/is1182 family transposase | DN590_27210 | Not Available | Negative | 5384843 - 5384994 | 5389.65 |
| hypothetical protein | DN590_27215 | Not Available | Positive | 5385164 - 5385649 | 16768.8 |
| hypothetical protein | DN590_27220 | Not Available | Positive | 5385660 - 5385914 | 9565.24 |
| hypothetical protein | DN590_27225 | Not Available | Negative | 5386183 - 5386455 | 9846.64 |
| cyclic diguanylate phosphodiesterase | DN590_27230 | Not Available | Positive | 5386697 - 5388220 | 56519.0 |
| hypothetical protein | DN590_27235 | Not Available | Positive | 5388390 - 5388587 | 7186.95 |
| 3-deoxy-d-manno-oct-2-ulosonate iii transferase waaz | DN590_27240 | Not Available | Negative | 5388619 - 5389308 | 25866.0 |
| cd(ii)/pb(ii)-responsive transcriptional regulator | DN590_27245 | Not Available | Negative | 5389480 - 5389914 | 16051.5 |
| copper-translocating p-type atpase | DN590_27250 | Not Available | Positive | 5390000 - 5392405 | 84801.8 |
| signal peptidase ii | DN590_27255 | Not Available | Positive | 5392402 - 5393478 | 39293.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

