Citrobacter freundii strain GEO_16_Eff_A

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain GEO_16_Eff_A is a Gram-negative, facultative anaerobic rod bacterium. It possesses flagella, which contribute to its motility. This strain has been identified in diverse habitats, including hospital sewage, intestinal tracts, sewage, soil, and surface waters. Its ability to thrive in such varied environments indicates its ecological resilience. The strain is associated with a wide range of hosts, including Homo sapiens, various Metazoa, and several domesticated and wild animals such as Oryctolagus cuniculus (rabbits), Canis lupus familiaris (dogs), Felis catus (cats), and aquatic species like Tilapia and Cyprinus carpio. This broad host range suggests that Citrobacter freundii strain GEO_16_Eff_A may play a role in the microbiomes of these organisms, potentially influencing their health and disease states. C. freundii is known for its capacity to cause opportunistic infections, particularly in humans, where it can lead to urinary and respiratory tract infections. It is also implicated in infections in animals, including respiratory tract and wound infections in horses and dogs, as well as pleuritis and urinary tract infections in cats. The presence of this strain in hospital sewage underscores its potential as a pathogen in healthcare settings, highlighting the importance of monitoring and managing its spread. Overall, the ecological versatility and pathogenic potential of Citrobacter freundii strain GEO_16_Eff_A illustrate the complex interactions between microbial communities and their hosts across various environments, emphasizing the need for continued research on its role in health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain GEO_16_Eff_A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain GEO_16_Eff_A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain GEO_16_Eff_A

Gene Summary

Adenine Count

1321210 bp

Thymine Count

1313182 bp

Guanine Count

1404681 bp

Cytosine Count

1426347 bp

Genome Length

5465420 bp

Protein-coding Genes

5038 genes

Non-Coding Genes

330 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDN590_26990Not AvailablePositive5354660 - 53548516790.31
tunicamycin resistance proteinDN590_26995Not AvailableNegative5355333 - 535587520520.8
aminoglycoside n-acetyltransferase aac(3)-iidDN590_27000Not AvailableNegative5355888 - 535674830671.4
hypothetical proteinDN590_27005Not AvailableNegative5356910 - 535742319390.2
toxin-antitoxin system hicb family antitoxinDN590_27010Not AvailableNegative5357434 - 53576256962.47
prevent-host-death proteinDN590_27020Not AvailablePositive5358159 - 53583356631.73
hypothetical proteinDN590_27025Not AvailablePositive5358739 - 535911313658.5
intestinal colonization autotransporter adhesin mislDN590_27030Not AvailableNegative5359228 - 536203298890.9
helix-turn-helix transcriptional regulatorDN590_27035Not AvailableNegative5362108 - 53621752491.09
is6 family transposaseDN590_27040Not AvailablePositive5362176 - 53622502724.26

Displaying genes 5231 – 5240 of 5368 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total