Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_26990 | Not Available | Positive | 5354660 - 5354851 | 6790.31 |
| tunicamycin resistance protein | DN590_26995 | Not Available | Negative | 5355333 - 5355875 | 20520.8 |
| aminoglycoside n-acetyltransferase aac(3)-iid | DN590_27000 | Not Available | Negative | 5355888 - 5356748 | 30671.4 |
| hypothetical protein | DN590_27005 | Not Available | Negative | 5356910 - 5357423 | 19390.2 |
| toxin-antitoxin system hicb family antitoxin | DN590_27010 | Not Available | Negative | 5357434 - 5357625 | 6962.47 |
| prevent-host-death protein | DN590_27020 | Not Available | Positive | 5358159 - 5358335 | 6631.73 |
| hypothetical protein | DN590_27025 | Not Available | Positive | 5358739 - 5359113 | 13658.5 |
| intestinal colonization autotransporter adhesin misl | DN590_27030 | Not Available | Negative | 5359228 - 5362032 | 98890.9 |
| helix-turn-helix transcriptional regulator | DN590_27035 | Not Available | Negative | 5362108 - 5362175 | 2491.09 |
| is6 family transposase | DN590_27040 | Not Available | Positive | 5362176 - 5362250 | 2724.26 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

