Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is6 family transposase | DN590_26880 | Not Available | Positive | 5338374 - 5338448 | 2724.26 |
| mph(a) family macrolide 2'-phosphotransferase | DN590_26885 | Not Available | Positive | 5338570 - 5339475 | 33229.7 |
| mfs transporter | DN590_26890 | Not Available | Positive | 5339472 - 5340710 | 40959.1 |
| tetr/acrr family transcriptional regulator | DN590_26895 | Not Available | Positive | 5340710 - 5341294 | 21629.4 |
| hypothetical protein | DN590_26900 | Not Available | Positive | 5341240 - 5341596 | 12830.5 |
| is6 family transposase is6100 | DN590_26910 | Not Available | Negative | 5341787 - 5342551 | 29684.0 |
| resolvase | DN590_26915 | Not Available | Positive | 5342580 - 5342762 | 7042.62 |
| padr family transcriptional regulator | DN590_26920 | Not Available | Negative | 5342778 - 5343083 | 11477.8 |
| chromate transporter | DN590_26925 | Not Available | Negative | 5343094 - 5344299 | 42278.4 |
| hypothetical protein | DN590_26930 | Not Available | Negative | 5344455 - 5344658 | 7334.63 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

