Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eal domain-containing protein | DN590_26320 | Not Available | Negative | 5252942 - 5254390 | 54975.1 |
| molecular chaperone | DN590_26325 | Not Available | Negative | 5254908 - 5255603 | 26359.9 |
| fimbrial protein | DN590_26330 | Not Available | Negative | 5255600 - 5257207 | 58066.3 |
| fimbrial biogenesis outer membrane usher protein | DN590_26335 | Not Available | Negative | 5257218 - 5259710 | 91402.2 |
| hypothetical protein | DN590_26340 | Not Available | Negative | 5259769 - 5260446 | 24855.8 |
| fimbrial protein | DN590_26345 | Not Available | Negative | 5260499 - 5261086 | 20188.0 |
| is6 family transposase | DN590_26350 | Not Available | Positive | 5261548 - 5261622 | 2724.26 |
| recombinase family protein | DN590_26355 | Not Available | Positive | 5261677 - 5262237 | 21596.9 |
| tn3 family transposase | DN590_26360 | Not Available | Positive | 5262240 - 5265206 | 111073.0 |
| is110-like element is5075 family transposase | DN590_26365 | Not Available | Positive | 5265285 - 5266289 | 37527.7 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

