Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glucuronidase | DN590_26015 | Not Available | Positive | 5196083 - 5197894 | 68716.9 |
| glucuronide transporter | DN590_26020 | Not Available | Positive | 5197891 - 5199264 | 49684.7 |
| glucuronide uptake porin uidc | DN590_26025 | Not Available | Positive | 5199313 - 5200578 | 46757.1 |
| mannonate dehydratase | DN590_26030 | Not Available | Positive | 5200880 - 5202064 | 44795.4 |
| fructuronate reductase | DN590_26035 | Not Available | Positive | 5202171 - 5203640 | 54522.6 |
| glucuronate isomerase | DN590_26040 | Not Available | Positive | 5203660 - 5205090 | 54796.5 |
| gntr family transcriptional regulator | DN590_26045 | Not Available | Positive | 5205308 - 5206096 | 30332.4 |
| chromosome partitioning protein parb | DN590_26050 | Not Available | Negative | 5206606 - 5207136 | 19576.4 |
| hypothetical protein | DN590_26055 | Not Available | Negative | 5207141 - 5207338 | 7666.14 |
| hypothetical protein | DN590_26060 | Not Available | Negative | 5207425 - 5207649 | 8470.66 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

