Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1173 family protein | DN590_25965 | Not Available | Positive | 5186596 - 5187915 | 49243.1 |
| hypothetical protein | DN590_25970 | Not Available | Positive | 5187928 - 5188131 | 7272.9 |
| atp/gtp-binding protein | DN590_25975 | Not Available | Negative | 5188195 - 5189400 | 45222.9 |
| duf4942 domain-containing protein | DN590_25980 | Not Available | Negative | 5189397 - 5190215 | 30663.7 |
| transcriptional repressor rcnr | DN590_25985 | Not Available | Negative | 5190681 - 5190953 | 10178.4 |
| nickel/cobalt efflux protein rcna | DN590_25990 | Not Available | Positive | 5191076 - 5192191 | 41020.2 |
| copper-binding protein | DN590_25995 | Not Available | Negative | 5192449 - 5192883 | 15673.5 |
| sensor histidine kinase | DN590_26000 | Not Available | Negative | 5193101 - 5194447 | 50879.9 |
| is5/is1182 family transposase | DN590_26005 | Not Available | Positive | 5194486 - 5194795 | 11800.2 |
| tetr/acrr family transcriptional regulator | DN590_26010 | Not Available | Negative | 5195098 - 5195706 | 22507.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

