Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is1182-like element iskpn6 family transposase | DN590_25860 | Not Available | Positive | 5161304 - 5162623 | 48346.5 |
| carbapenem-hydrolyzing class a beta-lactamase kpc-3 | DN590_25865 | Not Available | Negative | 5162873 - 5163754 | 31143.1 |
| aaa family atpase | DN590_25875 | Not Available | Negative | 5164141 - 5164920 | 29142.4 |
| is21 family transposase | DN590_25880 | Not Available | Negative | 5164917 - 5165942 | 39324.4 |
| is3-like element tn4401 family transposase | DN590_25885 | Not Available | Negative | 5166049 - 5169078 | 116023.0 |
| integrase | DN590_25890 | Not Available | Positive | 5169188 - 5170903 | 63303.8 |
| homocysteine s-methyltransferase | DN590_25895 | Not Available | Negative | 5171329 - 5172261 | 33380.6 |
| s-methylmethionine permease | DN590_25900 | Not Available | Negative | 5172248 - 5173651 | 50532.7 |
| 3-(3-hydroxy-phenyl)propionate transporter mhpt | DN590_25905 | Not Available | Negative | 5173926 - 5175137 | 41579.6 |
| 4-hydroxy-2-oxovalerate aldolase | DN590_25910 | Not Available | Negative | 5175207 - 5176220 | 36459.6 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

