Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellin flic | DN590_25810 | Not Available | Positive | 5154244 - 5155752 | 52834.1 |
| phase 1 flagellin transcriptional repressor | DN590_25815 | Not Available | Positive | 5155822 - 5156346 | 19751.8 |
| hypothetical protein | DN590_25820 | Not Available | Negative | 5156513 - 5157052 | 19566.0 |
| hypothetical protein | DN590_25825 | Not Available | Negative | 5157160 - 5157405 | 8729.39 |
| hypothetical protein | DN590_25830 | Not Available | Positive | 5157595 - 5157804 | 7605.12 |
| hypothetical protein | DN590_25835 | Not Available | Positive | 5157972 - 5158169 | 7120.8 |
| hypothetical protein | DN590_25840 | Not Available | Positive | 5158640 - 5158876 | 8592.59 |
| replication initiation protein | DN590_25845 | Not Available | Positive | 5159336 - 5159449 | 3906.58 |
| hypothetical protein | DN590_25850 | Not Available | Negative | 5159830 - 5160366 | 20745.9 |
| hypothetical protein | DN590_25855 | Not Available | Negative | 5160655 - 5160891 | 9191.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

