Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator cbl | DN590_25610 | Not Available | Positive | 5122701 - 5123651 | 35599.8 |
| hypothetical protein | DN590_25615 | Not Available | Positive | 5124062 - 5124244 | 6997.61 |
| Trna-asn | Not Available | Not Available | Positive | 5124269 - 5124344 | Not Available |
| mate family efflux transporter | DN590_25625 | Not Available | Negative | 5124444 - 5125898 | 52675.8 |
| Trna-asn | Not Available | Not Available | Positive | 5126092 - 5126167 | Not Available |
| phenylacetic acid degradation bifunctional protein paaz | DN590_25635 | Not Available | Negative | 5126251 - 5128296 | 73121.7 |
| type ii toxin-antitoxin system mrna interferase toxin, rele/stbe family | DN590_25640 | Not Available | Positive | 5128433 - 5128501 | 2566.14 |
| type iv toxin-antitoxin system yeeu family antitoxin | DN590_25650 | Not Available | Negative | 5128655 - 5128972 | 11983.3 |
| duf987 domain-containing protein | DN590_25655 | Not Available | Negative | 5128991 - 5129212 | 8581.41 |
| dna repair protein radc | DN590_25660 | Not Available | Negative | 5129221 - 5129697 | 18099.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

