Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-dicitrate abc transporter atp-binding subunit | DN590_25555 | Not Available | Negative | 5112088 - 5112855 | 27996.0 |
| iron-dicitrate abc transporter permease fecd | DN590_25560 | Not Available | Negative | 5112856 - 5113812 | 33781.1 |
| iron-dicitrate abc transporter permease fecc | DN590_25565 | Not Available | Negative | 5113809 - 5114807 | 35136.3 |
| fe(3+)-dicitrate abc transporter substrate-binding protein fecb | DN590_25570 | Not Available | Negative | 5114804 - 5115703 | 32845.5 |
| tonb-dependent siderophore receptor | DN590_25575 | Not Available | Negative | 5115778 - 5118102 | 85347.3 |
| fec operon regulator fecr | DN590_25580 | Not Available | Negative | 5118189 - 5119142 | 35449.9 |
| rna polymerase subunit sigma | DN590_25585 | Not Available | Negative | 5119139 - 5119660 | 19428.5 |
| alpha/beta hydrolase | DN590_25590 | Not Available | Negative | 5119951 - 5120934 | 34863.4 |
| Trna-asn | Not Available | Not Available | Positive | 5121280 - 5121355 | Not Available |
| nitrogen assimilation transcriptional regulator | DN590_25605 | Not Available | Positive | 5121682 - 5122599 | 32839.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

