Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trhk | DN590_25500 | Not Available | Negative | 5102859 - 5104130 | 45288.6 |
| pilus assembly protein | DN590_25505 | Not Available | Negative | 5104130 - 5104918 | 29314.2 |
| plasmid transfer protein | DN590_25510 | Not Available | Negative | 5104930 - 5105280 | 13420.6 |
| pili assembly chaperone | DN590_25515 | Not Available | Negative | 5105298 - 5105651 | 12331.5 |
| hypothetical protein | DN590_25520 | Not Available | Negative | 5106174 - 5106422 | 9400.33 |
| repb family plasmid replication initiator protein | DN590_25525 | Not Available | Negative | 5106800 - 5107675 | 33224.4 |
| hypothetical protein | DN590_25530 | Not Available | Positive | 5108152 - 5109204 | 39348.9 |
| hypothetical protein | DN590_25535 | Not Available | Positive | 5109224 - 5109424 | 7890.57 |
| hypothetical protein | DN590_25540 | Not Available | Positive | 5109421 - 5110137 | 26871.0 |
| hypothetical protein | DN590_25545 | Not Available | Negative | 5110359 - 5110696 | 12780.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

