Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_25165 | Not Available | Negative | 5036435 - 5040739 | 158435.0 |
| plasmid transfer protein | DN590_25170 | Not Available | Negative | 5040859 - 5041413 | 20504.8 |
| htdf | DN590_25175 | Not Available | Negative | 5041422 - 5041847 | 15589.8 |
| transfer repressor | DN590_25180 | Not Available | Negative | 5041837 - 5042289 | 16560.2 |
| hnh endonuclease | DN590_25190 | Not Available | Positive | 5043057 - 5043929 | 32979.3 |
| hypothetical protein | DN590_25195 | Not Available | Negative | 5044158 - 5044361 | 7203.8 |
| toxin cbta | DN590_25200 | Not Available | Negative | 5044358 - 5044741 | 14092.0 |
| type iv toxin-antitoxin system yeeu family antitoxin | DN590_25205 | Not Available | Negative | 5044813 - 5045175 | 13307.0 |
| duf987 domain-containing protein | DN590_25210 | Not Available | Negative | 5045201 - 5045422 | 8698.54 |
| hypothetical protein | DN590_25215 | Not Available | Negative | 5045443 - 5045922 | 17821.6 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

